DuPAL_Analyzer/pom.xml

<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <groupId>info.hkzlab.dupal.analyzer</groupId>
  <artifactId>dupal-analyzer</artifactId>
  <version>0.0.5</version>

  <name>dupal-analyzer</name>
  <!-- FIXME change it to the project's website -->
  <url>http://www.example.com</url>

  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <maven.compiler.source>1.8</maven.compiler.source>
    <maven.compiler.target>1.8</maven.compiler.target>
  </properties>

  <dependencies>
    <dependency>
      <groupId>io.github.java-native</groupId>
      <artifactId>jssc</artifactId>
      <version>2.9.2</version>
    </dependency>

    <dependency>
      <groupId>io.github.java-native</groupId>
      <artifactId>jssc-javadoc</artifactId>
      <version>2.9.2</version>
      <scope>system</scope>
      <systemPath>${project.basedir}/lib/jssc-2.9.2-javadoc.jar</systemPath>
    </dependency>

    <dependency>
      <groupId>io.github.java-native</groupId>
      <artifactId>jssc-sources</artifactId>
      <version>2.9.2</version>
      <scope>system</scope>
      <systemPath>${project.basedir}/lib/jssc-2.9.2-sources.jar</systemPath>
    </dependency>

    <dependency>
     <groupId>org.slf4j</groupId>
     <artifactId>slf4j-api</artifactId>
     <version>1.7.30</version>
    </dependency>

    <!--dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-jdk14</artifactId>
      <version>1.7.30</version>
    </dependency-->

    <dependency>
     <groupId>org.slf4j</groupId>
     <artifactId>slf4j-simple</artifactId>
     <version>1.7.30</version>
    </dependency>

    <dependency>
      <groupId>org.scijava</groupId>
      <artifactId>native-lib-loader</artifactId>
      <version>2.3.4</version>
    </dependency>

    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>4.11</version>
      <scope>test</scope>
    </dependency>
  </dependencies>

  <build>
    <plugins>
      <plugin>
        <artifactId>maven-assembly-plugin</artifactId>
        <executions>
          <execution>
            <id>make-assembly</id>
            <phase>package</phase>
            <goals>
              <goal>single</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <archive>
            <manifest>
              <mainClass>info.hkzlab.dupal.analyzer.App</mainClass>
              <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
              <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
            </manifest>
          </archive>
          <descriptorRefs>
            <descriptorRef>jar-with-dependencies</descriptorRef>
          </descriptorRefs>
        </configuration>
      </plugin>
    </plugins>
    <pluginManagement><!-- lock down plugins versions to avoid using Maven defaults (may be moved to parent pom) -->
      <plugins>
        <!-- clean lifecycle, see https://maven.apache.org/ref/current/maven-core/lifecycles.html#clean_Lifecycle -->        
        <plugin>
          <artifactId>maven-clean-plugin</artifactId>
          <version>3.1.0</version>
        </plugin>
        <!-- default lifecycle, jar packaging: see https://maven.apache.org/ref/current/maven-core/default-bindings.html#Plugin_bindings_for_jar_packaging -->
        <plugin>
          <artifactId>maven-resources-plugin</artifactId>
          <version>3.0.2</version>
        </plugin>
        <plugin>
          <artifactId>maven-compiler-plugin</artifactId>
          <version>3.8.0</version>
        </plugin>
        <plugin>
          <artifactId>maven-surefire-plugin</artifactId>
          <version>2.22.1</version>
        </plugin>
        <plugin>
          <artifactId>maven-jar-plugin</artifactId>
          <version>3.0.2</version>				
          <configuration>
					  <archive>
						  <manifest>
							  <mainClass>info.hkzlab.dupal.analyzer.App</mainClass>
                <addDefaultImplementationEntries>true</addDefaultImplementationEntries>
                <addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
						  </manifest>
					  </archive>
				  </configuration>
        </plugin>
        <plugin>
          <artifactId>maven-install-plugin</artifactId>
          <version>2.5.2</version>
        </plugin>
        <plugin>
          <artifactId>maven-deploy-plugin</artifactId>
          <version>2.8.2</version>
        </plugin>
        <!-- site lifecycle, see https://maven.apache.org/ref/current/maven-core/lifecycles.html#site_Lifecycle -->
        <plugin>
          <artifactId>maven-site-plugin</artifactId>
          <version>3.7.1</version>
        </plugin>
        <plugin>
          <artifactId>maven-project-info-reports-plugin</artifactId>
          <version>3.0.0</version>
        </plugin>
      </plugins>
    </pluginManagement>
  </build>
</project>